Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR7500317/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  135,846,503
 Normal Paired: 133,533,069 (98.30%)
 Chimeric Paired: 5,360 (0.00%)
 Chimeric Ambiguous: 1,569 (0.00%)
 Unmapped: 2,306,505 (1.70%)
 Ligation Motif Present: 11,935 (0.01%)
Alignable (Normal+Chimeric Paired): 133,538,429 (98.30%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-22T22:14:50,480]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 41,116,131 (30.27%)
PCR Duplicates: 92,422,298 (68.03%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 43,052,138
Intra-fragment Reads: 22,982,589 (16.92% / 55.90%)
Below MAPQ Threshold: 4,630,679 (3.41% / 11.26%)
Hi-C Contacts: 13,502,863 (9.94% / 32.84%)
 Ligation Motif Present: 4,397  (0.00% / 0.01%)
 3' Bias (Long Range): 83% - 17%
 Pair Type %(L-I-O-R): 26% - 25% - 25% - 25%
Inter-chromosomal: 1,869,005  (1.38% / 4.55%)
Intra-chromosomal: 11,633,858  (8.56% / 28.30%)
Short Range (<20Kb): 6,835,240  (5.03% / 16.62%)
Long Range (>20Kb): 4,798,583  (3.53% / 11.67%)